Publications – Vproteomics

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Molecular mechanism of distinct chemokine engagement and functional divergence of the human Duffy antigen receptor.

Cell. 2024 Aug 22;187(17):4751-4769.e25. doi: 10.1016/j.cell.2024.07.005

Quadir S, Khan NA, Singh DK, Faraz A, Jhingan GD, Joshi MC. Exposure to High Dosage of Gold Nanoparticles Accelerates Growth Rate by Modulating Ribosomal Protein Expression.

ACS Nano. 2023 Aug 22;17(16):15529-15541. doi:
10.1021/acsnano.3c01973. Epub 2023 Aug 7. PMID: 37548618.

Singh J, Kaushik S, Maharana C, Jhingan GD, Dhar DW. Elevated inorganic carbon and salinity enhances photosynthesis and ATP synthesis in picoalga Picocystis salinarum as revealed by label free quantitative proteomics.

Front Microbiol. 2023 Mar 3;14:1059199. doi:10.3389/fmicb.2023.1059199. PMID:36937286; PMCID: PMC10020504.

Singh SS, Mansuri MS, Naiyer S, Kaur D, Agrahari M, Srinivasan S, Jhingan GD, Bhattacharya A, Bhattacharya S. Multi-omics analysis to characterize molecular adaptation of Entamoeba histolytica during serum stress.

Proteomics. 2022
Nov;22(22):e2200148. doi: 10.1002/pmic.202200148. Epub 2022 Sep 13. PMID:
36066285.

Pandey S, Kumari P, Baidya M, Kise R, Cao Y, Dwivedi-Agnihotri H, Banerjee R, Li XX, Cui CS, Lee JD, Kawakami K, Maharana J, Ranjan A, Chaturvedi M, Jhingan GD, Laporte SA, Woodruff TM, Inoue A, Shukla AK. Intrinsic bias at non-canonical, β-arrestin-coupled seven transmembrane receptors.

Mol Cell. 2021 Nov 18;81(22):4605-4621.e11. doi: 10.1016/j.molcel.2021.09.007. Epub 2021 Sep 27.
PMID: 34582793; PMCID: PMC7612807.

Jhingan GD, Manich M, Olivo-Marin JC, Guillen N. Live Cells Imaging and Comparative Phosphoproteomics Uncover Proteins from the Mechanobiome in Entamoeba histolytica.

Int J Mol Sci. 2023 May 13;24(10):8726. doi:
10.3390/ijms24108726. PMID: 37240072; PMCID: PMC10217974. ACS Nano. 2023 Aug 22;17(16):15529-15541. doi: 10.1021/acsnano.3c01973. Epub 2023 Aug 7. PMID: 37548618.

Singh D, Yadav R, Kaushik S, Wadhwa N, Kapoor S, Kapoor M. Transcriptome Analysis of ppdnmt2 and Identification of Superoxide Dismutase as a Novel Interactor of DNMT2 in the Moss Physcomitrella patens.

Front Plant Sci. 2020 Aug 5;11:1185. doi: 10.3389/fpls.2020.01185. PMID: 32849734; PMCID:
PMC7419982.

Choudhary M, Kaushik S, Kapil A, Shrivastava R, Vashistt J. Decoding Acinetobacter baumannii biofilm dynamics and associated protein markers:proteomic and bioinformatics approach.

Arch Microbiol. 2022 Mar 3;204(4):200.
doi: 10.1007/s00203-022-02807-y. PMID: 35239017.

Tyagi P, Pal VK, Agrawal R, Singh S, Srinivasan S, Singh A. Mycobacterium tuberculosis Reactivates HIV-1 via Exosome-Mediated Resetting of Cellular Redox Potential and Bioenergetics.

mBio. 2020 Mar 3;11(2):e03293-19. doi: 10.1128/mBio.03293-19. PMID: 32127457; PMCID: PMC7064780.

Rao A, Sahay P, Chakraborty M, Prusty BK, Srinivasan S, Jhingan GD, Mishra P,
Modak R, Suar M. Switch to Autophagy the Key Mechanism for Trabecular Meshwork Death in Severe Glaucoma.

Clin Ophthalmol. 2021 Jul 14;15:3027-3039. doi:10.2147/OPTH.S292218. PMID: 34285469; PMCID: PMC8286731.

Gholizadeh MA, Shamsabadi FT, Yamchi A, Golalipour M, Jhingan GD, Shahbazi M. Identification of hub genes associated with RNAi-induced silencing of XIAP through targeted proteomics approach in MCF7 cells.

Cell Biosci. 2020 Jun 11;10:78. doi: 10.1186/s13578-020-00437-9. PMID: 32537125; PMCID: PMC7291505

Khazaei G, Shamsabadi FT, Yamchi A, Golalipour M, Jhingan GD, Shahbazi M. Proteomics evaluation of MDA-MB-231 breast cancer cells in response to RNAi- induced silencing of hPTTG.

Life Sci. 2019 Dec 15;239:116873. doi:10.1016/j.lfs.2019.116873. Epub 2019 Sep 12. PMID: 31521689.

Mayahi S, Golalipour M, Yamchi A, Jhingan GD, Shahbazi M. New insights into the roles of the FOXO3 and P27Kip1 genes in signaling pathways.

Ups J Med Sci. 2019 Aug;124(3):149-157. doi: 10.1080/03009734.2019.1623351. Epub 2019 Jul 11. PMID: 31294654; PMCID: PMC6758695.

Kaur P, Rausch M, Malakar B, Watson U, Damle NP, Chawla Y, Srinivasan S, Sharma K, Schneider T, Jhingan GD, Saini D, Mohanty D, Grein F, Nandicoori VK. LipidII interaction with specific residues of Mycobacterium tuberculosis PknB extracytoplasmic domain governs its optimal activation.

Nat Commun. 2019 Mar 15;10(1):1231. doi: 10.1038/s41467-019-09223-9. PMID: 30874556; PMCID: PMC6428115.

Hernández-Cuevas NA, Jhingan GD, Petropolis D, Vargas M, Guillen N. Acetylation is the most abundant actin modification in Entamoeba histolytica and modifications of actin’s amino-terminal domain change cytoskeleton activities.

Cell Microbiol. 2019 Apr;21(4):e12983. doi: 10.1111/cmi.12983. Epub 2018 Dec 21. PMID: 30506797.

Jhingan GD, Kumari S, Jamwal SV, Kalam H, Arora D, Jain N, Kumaar LK, Samal A, Rao KVS, Kumar D, Nandicoori VK. Comparative Proteomic Analyses of Avirulent, Virulent, and Clinical Strains of Mycobacterium tuberculosis Identify Strain-specific Patterns.

J Biol Chem. 2016 Jul 1;291(27):14257-14273. doi:10.1074/jbc.M115.666123. Epub 2016 May 5. PMID: 27151218; PMCID: PMC4933181.

Mansuri MS, Babuta M, Ali MS, Bharadwaj R, Deep jhingan G, Gourinath S, Bhattacharya S, Bhattacharya A. Autophosphorylation at Thr279 of Entamoeba histolytica atypical kinase EhAK1 is required for activity and regulation of erythrophagocytosis.

Sci Rep. 2016 Jan 7;6:16969. doi: 10.1038/srep16969. PMID:26739245; PMCID: PMC4703981.

Petropolis DB, Faust DM, Deep Jhingan G, Guillen N. A new human 3D-liver model unravels the role of galectins in liver infection by the parasite
Entamoeba histolytica.

PLoS Pathog. 2014 Sep 11;10(9):e1004381. doi:10.1371/journal.ppat.1004381. PMID: 25211477; PMCID: PMC4161482.

Perdomo D, Aït-Ammar N, Syan S, Sachse M, Jhingan GD, Guillén N. Cellular and proteomics analysis of the endomembrane system from the unicellular Entamoeba histolytica.

J Proteomics. 2015 Jan 1;112:125-40. doi: 10.1016/j.jprot.2014.07.034. Epub 2014 Aug 7. PMID: 25109464.

Rajanala K, Sarkar A, Jhingan GD, Priyadarshini R, Jalan M, Sengupta S, Nandicoori VK. Phosphorylation of nucleoporin Tpr governs its differential localization and is required for its mitotic function.

J Cell Sci. 2014 Aug 15;127(Pt 16):3505-20. doi: 10.1242/jcs.149112.